This interface allows the user to define a set of genomes and displays a tree showing the genomic similarity.
The genomic similarity is estimated using Mash, a software that computes a distance between two genomes. This distance is correlated to the ANI like: D ≈ 1-ANI
The tree displays clustering annotations. This clustering has been computed from all-pairs distances ≤ 0.06 (≈94% ANI) that correspond to the ANI standart to define a species group.
The clustering has been computed using the Louvain Community Detection.