MaGe - MicroScope - Web Interface System & Specialized Databases for (re)Annotation and Analysis of Microbial Genomes

Genome Browser interface provides an user-friendly way to visualize and explore a replicon content (cartographic map of the genome), together with the similarity results (synteny maps) obtained with other bacterial genomes available in our PkGDB database (i.e, (re)annotation of bacterial genomes or complete proteome downloaded from the RefSeq/WGS sections). Artemis tool can be launched at this level to examine more precisely the nucleotidic/proteic sequences (a useful interface to correct translational start codon positions if necessary). For genomic objects drawn in part of the chromosome visualized in the cartographic map, additional information is listed in a table.

Label	Type	Gene	Begin	End	Length	Frame	Product	Matrix	Evidence	AMIGene Status	Mutation	GC Content	GC3 Content	CAI	Mw (Da)	pI
ACIAD0001	CDS	dnaA	201	1598	1398	+3	Chromosomal replication initiator protein dnaA	2	validated/Curated	no	no	0.4385	0.3734	0.61	52440.64	8.15
ACIAD0002	CDS	dnaN	1834	2982	1149	+1	DNA polymerase III, beta chain	2	validated/Curated	no	no	0.4413	0.3708	0.58	42306.74	5.22
ACIAD0003	CDS	recF	2998	4074	1077	+1	DNA replication, recombinaison and repair protein	1	validated/Curated	no	no	0.4206	0.3760	0.58	41075.48	7.03
ACIAD0004	CDS	gyrB	4127	6595	2469	+2	DNA gyrase, subunit B (type II topoisomerase)	2	validated/Curated	no	no	0.4467	0.3900	0.63	91783.08	5.46
ACIAD0005	CDS	_	6712	6948	237	-2	conserved hypothetical protein	1	validated/Curated	no	no	0.4262	0.3797	0.70	8917.44	6.01
ACIAD0007	CDS	_	7336	9270	1935	-2	putative transport protein (ABC superfamily, atp_bind)	1	validated/Curated	no	no	0.4537	0.4047	0.62	72749.73	5.44
ACIAD0008	CDS	_	9651	10661	1011	+3	putative RND type efflux pump involved in aminoglycoside resistance (AdeT)	2	validated/Curated	no	no	0.4303	0.3472	0.69	36726.96	9.34
ACIAD0009	CDS	adeT	10910	11920	1011	+2	RND type efflux pump involved in aminoglycoside resistance	1	validated/Curated	no	no	0.4303	0.3858	0.56	37070.36	9.25
ACIAD0010	CDS	_	12039	12374	336	+3	putative chaperone involved in Fe-S cluster assembly and activation (HesB-like)	2	validated/Curated	no	no	0.4196	0.3304	0.58	11965.77	4.21
ACIAD0011	CDS	anmK	12436	13566	1131	-2	Anhydro-N-acetylmuramic acid kinase (AnhMurNAc kinase)	1	validated/finished	no	no	0.4598	0.3581	0.59	41659.66	5.68
ACIAD0013	CDS	tyrS	13646	14860	1215	+2	tyrosyl-tRNA synthetase	1	validated/Curated	no	no	0.4535	0.4222	0.60	44849.26	5.35
ACIAD0014	CDS	_	15431	15685	255	+2	conserved hypothetical protein	3	validated/Curated	no	no	0.3725	0.3412	0.70	10217.40	5.70
ACIAD0015	CDS	_	15927	17882	1956	+3	putative 5'-nucleotidase NucA precursor	2	validated/Curated	no	no	0.4105	0.3190	0.57	72006.38	5.32
ACIADrRNA16S_1	rRNA	_	18416	19945	1530	+1	16S	_	validated/Curated	no	no	_	_	_	_	_

Sequence

Label

Type

Gene

Begin

End

Length

Frame

Product

Matrix

Evidence

AMIGene Status

Mutation

GC Content

GC3 Content

CAI

Mw (Da)

History

ACIAD0001

CDS

dnaA

201

1598

1398

Chromosomal replication initiator protein dnaA

validated/Curated

0.4385

0.3734

0.61

52440.64

8.15

ACIAD0002

CDS

dnaN

1834

2982

1149

DNA polymerase III, beta chain

validated/Curated

0.4413

0.3708

0.58

42306.74

5.22

ACIAD0003

CDS

recF

2998

4074

1077

DNA replication, recombinaison and repair protein

validated/Curated

0.4206

0.3760

0.58

41075.48

7.03

ACIAD0004

CDS

gyrB

4127

6595

2469

DNA gyrase, subunit B (type II topoisomerase)

validated/Curated

0.4467

0.3900

0.63

91783.08

5.46

ACIAD0005

CDS

6712

6948

237

-2

conserved hypothetical protein

validated/Curated

0.4262

0.3797

0.70

8917.44

6.01

ACIAD0007

CDS

7336

9270

1935

-2

putative transport protein (ABC superfamily, atp_bind)

validated/Curated

0.4537

0.4047

0.62

72749.73

5.44

ACIAD0008

CDS

9651

10661

1011

putative RND type efflux pump involved in aminoglycoside resistance (AdeT)

validated/Curated

0.4303

0.3472

0.69

36726.96

9.34

ACIAD0009

CDS

adeT

10910

11920

1011

RND type efflux pump involved in aminoglycoside resistance

validated/Curated

0.4303

0.3858

0.56

37070.36

9.25

ACIAD0010

CDS

12039

12374

336

putative chaperone involved in Fe-S cluster assembly and activation (HesB-like)

validated/Curated

0.4196

0.3304

0.58

11965.77

4.21

ACIAD0011

CDS

anmK

12436

13566

1131

-2

Anhydro-N-acetylmuramic acid kinase (AnhMurNAc kinase)

validated/finished

0.4598

0.3581

0.59

41659.66

5.68

ACIAD0013

CDS

tyrS

13646

14860

1215

tyrosyl-tRNA synthetase

validated/Curated

0.4535

0.4222

0.60

44849.26

5.35

ACIAD0014

CDS

15431

15685

255

conserved hypothetical protein

validated/Curated

0.3725

0.3412

0.70

10217.40

5.70

ACIAD0015

CDS

15927

17882

1956

putative 5'-nucleotidase NucA precursor

validated/Curated

0.4105

0.3190

0.57

72006.38

5.32

ACIADrRNA16S_1

rRNA

18416

19945

1530

16S

validated/Curated

Sequence	Id	Begin	End	Comments
	RPTR1412651	17973	23828	9 repeats

Sequence

Begin

End

Comments

RPTR1412651

17973

23828

9 repeats

Acinetobacter baylyi ADP1 - chromosome ACIAD.1 Public

(sequence length : 3598621 bases)