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TAMARA - Transcriptome Analyses based on MAssive sequencing of RnAs

RNAseq Projects

Mesorhizobium Metallidurans (Maynaud et al, 2013, BMC Genomics 14(1):292)
  • Experiment Type: mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 3
  • Organism: Mesorhizobium sp. STM4661
  • Experiment Type: mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 3
  • Organism: Mesorhizobium metallidurans STM2683
Helicobacter pylori public data (Sharma et al, 2010, Nature 464:250-255)
  • Experiment Type: dir mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 5
  • Organism: Helicobacter pylori 26695
Salmonella Typhi public data (Perkins et al, 2009, PLoS Genetics 5(7):e1000569)
  • Experiment Type: dir mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 6
  • Organism: Salmonella enterica subsp. enterica serovar Typhi Ty2
Campylobacter jejuni Public Data (Chaudhuri et al., 2011, Microbiology 157:2922-2932)
  • Experiment Type: mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 4
  • Organism: Campylobacter jejuni subsp. jejuni NCTC 11168
Sufolobus solfataricus P2 Public Data (Wurtzel et al., 2010, Genome Res. 20(1):133-41)
  • Experiment Type: mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 5
  • Organism: Sulfolobus solfataricus P2
  • Experiment Type: TSS (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 3
  • Organism: Sulfolobus solfataricus P2
Acinetobacter baumannii ATCC 17978 (Chang et al, 2014, BMC Genomics 15:815)
  • Experiment Type: mRNAseq (sequencing kit: solexa, read type: se)
  • Mapping Strategy: ssaha2
  • Experiment Number: 3
  • Organism: Acinetobacter baumannii ATCC 17978
Methylobacterium extorquens public data (Chaignaud et al, 2017, Frontiers in Microbiology, 8:1600)
Mapping Overview Raw Read Count Analysis IGV

Helicobacter pylori public data (Sharma et al, 2010, Nature 464:250-255)
Mapping Overview Raw Read Count Analysis IGV

PhotorhabdusRNAseq (Mouammine et al., 2017, Scientific Reports, 7, 43670)
Mapping Overview Raw Read Count Analysis IGV

Mycobacterium tuberculosis (Eldholm et al. Genome Biology 2014, 15:490)
Mapping Overview Raw Read Count Analysis IGV

TAM_Ddeserti_VCD115 (De Groot et al, 2014, Genome Biol Evol 6:932 - Blanchard et al, 2017, MicrobiologyOpen 00:e477)
Mapping Overview Raw Read Count Analysis IGV

TAM_Pluminescens_TT01 (Payelleville et al., 2017, Frontiers in Microbiology, 8, 14 p)
Mapping Overview Raw Read Count Analysis IGV

Acinetobacter baumannii ATCC 17978 (Chang et al, 2014, BMC Genomics 15:815)
Mapping Overview Raw Read Count Analysis IGV

Neisseria meningitidis 8013 (Heidrich et al, 2017, Nucleic Acids Research 45: 6147)
Mapping Overview Raw Read Count Analysis IGV

RNAseq_Xnematophila_F1 (Jubelin et al., 2013, PLoS genetics, 9(10), e1003915)
Mapping Overview Raw Read Count Analysis IGV